{"id":6273,"date":"2025-08-20T19:30:04","date_gmt":"2025-08-20T10:30:04","guid":{"rendered":"http:\/\/www-dsc.naist.jp\/dsc_naist\/?page_id=6273"},"modified":"2025-11-11T18:10:55","modified_gmt":"2025-11-11T09:10:55","slug":"autumn-school-2025-sa","status":"publish","type":"page","link":"http:\/\/www-dsc.naist.jp\/dsc_naist\/en\/autumn-school-2025-sa\/","title":{"rendered":"9th Autumn School on Chemoinformatics 2025 &#8211; List of Short Abstract"},"content":{"rendered":"<h4>List of Short Abstract<\/h4>\n<p>Click on the lecture title to view the short abstract.<\/p>\n<h5>Invited Speakers (In Program Order)<\/h5>\n<p>Prof. J\u00fcrgen Bajorath\uff08University of Bonn\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Jurgen-Bajorath-short-abstract.pdf\">Chemical Language Models and Prediction Anatomy<\/a>&#8220;<\/em><\/p>\n<p>Prof. Alexander Tropsha\uff08The University of North Carolina at Chapel Hill\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Alexander-Tropsha-short-abstract.pdf\">AI\/ML approaches for generative chemical design and virtual screening acceleration<\/a>&#8220;<\/em><\/p>\n<p>Prof. Yoshihiro Yamanishi \uff08Nagoya University\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Yoshihiro-Yamanishi-short-abstract.pdf\">Data-driven drug search and design by machine learning<\/a>\u201d<\/em><\/p>\n<p>Prof. Yasushi Okuno\uff08Kyoto University\uff09<br \/>\n<i>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Yasushi-Okuno-short-abstract.pdf\">DX platform for target discovery and drug design<\/a>&#8220;<\/i><\/p>\n<p>Dr. Sharon Bryant\uff08Inte:Ligand\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Dr.-Sharon-Bryant-short-abstract.pdf\">Advanced 3D-Pharmacophores for Drug Discovery and De-Risking Neurotoxicity<\/a>&#8220;<\/em><\/p>\n<p>Prof. Gisbert Schneider\uff08ETH Zurich\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Gisbert-Schneider-short-abstract.pdf\">Deep drug design: Advancing from hits to leads<\/a>&#8220;<\/em><\/p>\n<p>Assoc. Prof. Tomoyuki Miyao\uff08NAIST\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Tomoyuki-Miyao-short-abstract.pdf\">QSPR modeling approaches representing conformations<\/a>&#8220;<\/em><\/p>\n<p>Prof. Thierry Langer\uff08University of Vienna\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Thierry-Langer-short-abstract.pdf\">Next Generation Pharmacophore Modeling: Novel Concepts &amp; Tools for Molecular Design<\/a>&#8220;<\/em><\/p>\n<p>Prof. Alexandre Varnek\uff08University of Strasbourg\uff09<br \/>\n&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Alexandre-Varnek-short-abstract.pdf\">Artificial Intelligence: The Future for Synthetic Chemistry?<\/a>&#8220;<\/p>\n<p>Prof. Kenji Hori\uff08TS Technology\uff09<br \/>\n<i>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Kenji-Hori-short-abstract.pdf\">Current in the data-driven synthesis route development methods in TS technology (DSRDM in TST) and its applications for fine chemicals<\/a>&#8220;<\/i><\/p>\n<p>Prof. Jose L Medina-Franco\uff08National Autonomous University of Mexico\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Jose-L-Medina-Franco-short-abstract.pdf\">D-Tools: An Open Platform for Research and education in Chemoinformatics.<\/a>&#8220;<\/em><\/p>\n<p>Prof. Dragos Horvath\uff08University of Strasbourg\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Dragos-Horvath-short-abstract.pdf\">Chemography \u2013 from Abstract Mathematics to Library Design<\/a>&#8220;<\/em><\/p>\n<p>Prof. Shigetaka Tomiya\uff08NAIST\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/02\/Prof.-Shiketaka-Tomiya-short-abstract.pdf\">Metrology informatics for electron microscopy<\/a>&#8220;<\/em><\/p>\n<p>Prof. Hanoch Senderowitz\uff08Bar-Ilan University\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/04\/Prof.Hanoch-Senderowitz_short-abstract.pdf\">Materials Informatics for green energy harvesting and storage<\/a>&#8220;<\/em><\/p>\n<p>Prof. Mikiya Fujii\uff08NAIST\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/04\/Prof.-Mikiya-Fujii-short-abstract.pdf\">Inorganic Materials Design Utilizing Machine Learning and Generative Adversarial Networks<\/a>&#8220;<\/em><\/p>\n<p>Prof. Manabu Sugimoto\uff08Daiichi University of Pharmacy\uff09<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/10\/Prof.-Manabu-Sugimoto-short-abstract.pdf\">Extended Molecular Representations for Electronic-Structure Informatics and Their Applications<\/a>&#8220;<\/em><\/p>\n<h5>General Oral Presenters (In Program Order)<\/h5>\n<p>O-1\u00a0 Hideya Tanaka (NAIST) <br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/08\/Hideya-Tanaka-short-abstract.pdf\">Quantitative structure\u2013reactivity relationship-guided mechanistic study of nitroxyl radical-catalyzed alcohol oxidation<\/a>&#8220;<\/em><\/p>\n<p>O-2\u00a0 Yuto Iwasaki (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/08\/Yuto-Iwasaki-short-abstract.pdf\">Rapid evaluation of virtually synthesized compounds using a support vector machine model with reactant-wise kernels<\/a>&#8220;<\/em><\/p>\n<p>O-3\u00a0 Yuki Matsukiyo (Nagoya University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/08\/Yuki-Matsukiyo-short-abstract.pdf\">Omics-based chemical structure generation considering molecular properties via deep reinforcement learning<\/a>&#8220;<\/em><\/p>\n<p>O-4\u00a0 Kowit Hengphasatporn (University of Tsukuba)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/08\/Kowit-Hengphasatporn-short-abstract.pdf\">The Full Mechanistic Tale of Pralidoxime in Acetylcholinesterase: Binding, Reaction, and Release<\/a>&#8220;<\/em><\/p>\n<p>O-5\u00a0 Pavel SIdorov (ICReDD, Hokkaido university )<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/08\/Pavel-SIdorov-short-abstract.pdf\">Bridging the Gap: Collaborative Tools for Chemoinformatics and Experimental Chemistry<\/a>&#8220;<\/em><\/p>\n<h5>Poster Presenters\uff08In presentation order\uff09<\/h5>\n<p>P-1\u00a0 \u00a0Wataru Takahara (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-2-Wataru-Takahara-short-abstract.pdf\">Domain Adaptation of Local LLMs for Metal-Sulfide Photocatalyst Discovery<\/a>&#8220;<\/em><\/p>\n<p>P-2\u00a0 \u00a0Sakthivel Balasubramaniyan (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-3-Sakthivel-Balasubramaniyan-short-abstract.pdf\">Machine Learning-Driven Retention Time Prediction for High-Throughput Evaluation of Supercritical Chromatography Columns<\/a>&#8220;<\/em><\/p>\n<p>P-3\u00a0 \u00a0Said Byadi (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-4-Said-Byadi-short-abstract.pdf\">Photoswitchable Wnt Pathway Agonists: Molecular Docking and Dynamics Reveal Selective Binding of cis-Isomer to Frizzled Receptors<\/a>&#8220;<\/em><\/p>\n<p>P-4\u00a0 \u00a0Philippe Gantzer (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-5-Philippe-Gantzer-short-abstract.pdf\">Multicomponent Reaction Optimization with Gaussian Processes on Fragment Count Descriptors<\/a>&#8220;<\/em><\/p>\n<p>P-5\u00a0 \u00a0Kaveri Prasad (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-6-Kaveri-Prasad-short-abstract.pdf\">Predictive Modeling and Experimental Validation of Azo-photo switches in Diverse Solvents<\/a>&#8220;<\/em><\/p>\n<p>P-6\u00a0 Gunther Stahl (OpenEye, Cadence Molecular Sciences)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/10\/Gunther_OpenEye_ESS_2025.pdf\">Extreme-Scale Search\u2026when Billions aren\u2019t Enough<\/a>&#8220;<\/em><\/p>\n<p>P-7\u00a0 \u00a0Riku Maeda (Kyushu Institute of Technology)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-8-Riku-Maeda-short-abstract.pdf\">Analysis of factors contributing to uncertainty in BCF predictions for chemical substances<\/a>&#8220;<\/em><\/p>\n<p>P-8\u00a0 Daimon Sakaguchi (YOKOHAMA National University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-9-Daimon-Sakaguchi-short-abstract.pdf\">Analysis of Asymmetric Reduction of Ketones Using Three-Dimensional Electronic States<\/a>&#8220;<\/em><\/p>\n<p>P-9\u00a0 Daiki Koge (Niigata University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-10-Daiki-Koge-short-abstract.pdf\">Enhancing Generalization Performance of Molecular Property Prediction via Graph Latent Diffusion Autoencoder<\/a>&#8220;<\/em><\/p>\n<p>P-10\u00a0 Viejay Ordillo (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-11-Viejay-Ordillo-short-abstract.pdf\">Generative Modeling for Materials Design and Discovery using Invertible String-based Materials Representation<\/a>&#8220;<\/em><\/p>\n<p>P-11\u00a0 MARTIN (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-12-MARTIN-short-abstract.pdf\">Developing Embedding Models for Cytochrome P450\u2013Ligand Interaction Scoring<\/a>&#8220;<\/em><\/p>\n<p>P-12\u00a0 Hiiro Sugita (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-13-Hiiro-Sugita-short-abstract.pdf\">Selective High-Precision Control of Process Variables in Automated Experimentation<\/a>&#8220;<\/em><\/p>\n<p>P-13\u00a0 Shuan Shinkawa (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-14-Shuan-Shinkawa-short-abstract.pdf\">Data assimilation model combined with symbolic regression for predicting band gaps of perovskite photocatalytic compounds.<\/a>&#8220;<\/em><\/p>\n<p>P-14\u00a0 Masatake Mizukami (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-15-Masatake-Mizukami-short-abstract.pdf\">Photocatalyst process informatics integrating experiment, simulation, and machine learning<\/a>&#8220;<\/em><\/p>\n<p>P-15\u00a0 Tang Xingyu (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-16-Tang-Xingyu-short-abstract.pdf\">Accelerating efficient reaction path search using NNP-AFIR method by pre-trained models<\/a>&#8220;<\/em><\/p>\n<p>P-16\u00a0 Ruben STAUB (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-17-Ruben-STAUB-short-abstract.pdf\">Solving the Passerini Reaction Controversy with Accelerated Reaction Path Search<\/a>&#8220;<\/em><\/p>\n<p>P-17\u00a0 Hiromu Yamada (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-18-Hiromu-Yamada-short-abstract.pdf\">Optimization of Copolymerization Conditions for Novel Copolymers Using Existing Polymerization Data and Physical Information<\/a>&#8220;<\/em><\/p>\n<p>P-18\u00a0 Mayumi Puspita (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-19-Mayumi-Puspita-short-abstract.pdf\">Distance-based applicability domain for screening Cu-based tantalate materials for visible-light-responsive photocatalyst candidates<\/a>&#8220;<\/em><\/p>\n<p>P-19\u00a0 Yuuto Matsumoto (YOKOHAMA National University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-20-Yuuto-Matsumoto-short-abstract.pdf\">Fingerprint-Informed Doc2Vec for Activity Prediction and Interpretation<\/a>&#8220;<\/em><\/p>\n<p>P-20\u00a0 Fumiya Yoshinori (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-21-Fumiya-Yoshinori-short-abstract.pdf\">Predicting the performance of doped hematite photoanodes incorporating the effects of lattice vibrations<\/a>&#8220;<\/em><\/p>\n<p>P-21\u00a0 Yujiro Matsuo (TS Technology)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-22-Yujiro-Matsuo-short-abstract.pdf\">Machine learning model for activation free energy and TS geometry of pericyclic reactions<\/a>&#8220;<\/em><\/p>\n<p>P-22\u00a0 Tomiya Yamamoto (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-23-Tomiya-Yamamoto-short-abstract.pdf\">Evaluation Framework for Thermodynamic and Chemical Validity in Generative Composition Models<\/a>&#8220;<\/em><\/p>\n<p>P-23\u00a0 Toru Yamaguchi (TS Technology)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-24-Toru-Yamaguchi-short-abstract.pdf\">User-Friendly Cloud System for Functional Chemical Synthesis Route Development<\/a>&#8220;<\/em><\/p>\n<p>P-24\u00a0 Koya Watanabe (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-25-Koya-Watanabe-short-abstract.pdf\">Development of an XRD Spectrum Generation Model for Crystal Structure Prediction Supporting Multi-site Substitution<\/a>&#8220;<\/em><\/p>\n<p>P-25\u00a0 Milo Roucairol (Hokkaido University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-26-Milo-Roucairol-short-abstract.pdf\">Improving Retrosynthetic Planning With New Algorithms<\/a>&#8220;<\/em><\/p>\n<p>P-26\u00a0 Supaporn Klabklaydee (Institute of Science Tokyo)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-27-Supaporn-Klabklaydee-short-abstract.pdf\">Breaking the CRAM Behavior: AI-Generated Molecules Unlock Hidden Enzymatic Pathways in Marine Carbon Cycling<\/a>&#8220;<\/em><\/p>\n<p>P-27\u00a0 &#8211;<\/p>\n<p>P-28\u00a0 Yusuke Tateishi (Kumamoto University)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/09\/P-29-Yusuke-Tateishi-short-abstract.pdf\">Towards Interpretable Prediction of SGLT2 Inhibitor Activity via Flexibility- and Electronic-Structure-Enhanced Graph Neural Networks<\/a>&#8220;<\/em><\/p>\n<p>P-29 Aian B. Ontoria (NAIST)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/10\/short_abstractP_29_Ontoria.Aian_.pdf\">AI-Accelerated Discovery of High-Performance Thermoelectrics through Multi-Objective Optimization<\/a>&#8220;<\/em><\/p>\n<p>P-30 Karina Martinez-Mayorga (National Autonomous University of Mexico)<br \/>\n<em>&#8220;<a href=\"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-content\/uploads\/2025\/10\/P-30-MartinezMayorga_ShortAbstact.pdf\">Dose-Dependent Bioactivity Disruptions and SPARFlow: From a Conceptual Challenge to a Methodological Tool<\/a>&#8220;<\/em><\/p>\n","protected":false},"excerpt":{"rendered":"<p>List of Short Abstract Click on the lecture title to view the short abstract. Invited Speakers (In Program Order) Prof. J\u00fcrgen Bajorath\uff08University of Bonn\uff09 &#8220;Chemical Language Models and Prediction Anatomy&#8220; Prof. Alexander Tropsha\uff08The University of North Carolina at Chapel Hill\uff09 &#8220;AI\/ML approaches for generative chemical design and virtual screening acceleration&#8220; Prof. Yoshihiro Yamanishi \uff08Nagoya University\uff09 [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_locale":"en_US","_original_post":"http:\/\/www-dsc.naist.jp\/dsc_naist\/?page_id=6271","_links_to":"","_links_to_target":""},"acf":[],"_links":{"self":[{"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/pages\/6273"}],"collection":[{"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/comments?post=6273"}],"version-history":[{"count":22,"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/pages\/6273\/revisions"}],"predecessor-version":[{"id":6474,"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/pages\/6273\/revisions\/6474"}],"wp:attachment":[{"href":"http:\/\/www-dsc.naist.jp\/dsc_naist\/wp-json\/wp\/v2\/media?parent=6273"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}