データ駆動型サイエンス創造センター

TOP＞Publications＞Academic Journal

Academic Journal

2021

  • Sashi Novitasari, Sakriani Sakti, Satoshi Nakamura, “Neural Incremental Speech Recognition Toward Real-time Machine Speech Translation,” IEICE Transactions on Information and Systems, vol.E104-D, no.12, Dec. 2021
  • Takeshi SAGA, Hiroki TANAKA, Hidemi IWASAKA, Satoshi NAKAMURA, “Multimodal Prediction of Social Responsiveness Score with BERT-based Text Features,” IEICE TRANSACTIONS on Information and Systems, vol.E105-D, no.3, Nov. 2021
  • Tomoki Uchida, Yumi Nakamura, Hiroki Tanaka, Satoshi Nakamura, Tomonori Okamura, Hiroshi Watanabe, Norihito Murayama, “Validity of a selective recall method for assessing water intake and its relationship with hydration status,” vol.2021, no.25, pp6623-6632, Nov. 2021
  • Yui Oka, Katsuhito Sudoh, Satoshi Nakamura, “Length-constrained Neural Machine Translation using Length Prediction and Perturbation into Length-aware Positional Encoding,” 自然言語処理, vol.28, no.3, pp778-801, 15 Sep. 2021
  • Seiya Kawano, Koichiro Yoshino, Satoshi Nakamura, “Controlled Neural Response Generation by Given Dialogue Acts Based on Label-aware Adversarial Learning,” Transactions of the Japanese Society for Artificial Intelligence, vol.36, no.4, ppE-KC9-1-E-KC9-14, Jul. 2021
  • Sahoko Nakayama, Andros Tjandra, Sakriani Sakti, Satoshi Nakamura, “Code-Switching ASR and TTS using Semisupervised Learning with Machine Speech Chain,” IEICE Transactions on Information and Systems, vol.E104-D, no.10, 8 Jul. 2021 
  • Haruko Yagura, Hiroki Tanaka, Taiki Kinoshita, Hiroki Watanabe, Shunnosuke Motomura, Katsuhito Sudoh, Satoshi Nakamura, “Selective Attention Measurement of Experienced Simultaneous Interpreters using EEG Phase-locked Response,” Frontiers in Human Neuroscience, Jun. 2021
  • Johanes Effendi, Andros Tjandra, Sakriani Sakti, Satoshi Nakamura, “Multimodal Chain: Cross-Modal Collaboration Through Listening, Speaking, and Visualizing,” IEEE Access, vol.9, pp70286-70299, May. 2021
  • Hiroki Tanaka, Hidemi Iwasaka, Yasuhiro Matsuda, Kosuke Okazaki, Satoshi Nakamura, “Analyzing Self-Efficacy and Summary Feedback in Automated Social Skills Training,” IEEE, Apr. 2021    
  • Johanes Effendi, Sakriani Sakti, Satoshi Nakamura, “End-to-End Image-to-Speech Generation for Untranscribed Unknown Languages,” IEEE Access, vol.9, pp55144-55154, Apr. 2021
  • Yoichi Ishibashi, Katsuhito Sudoh, Koichiro Yoshino, Satoshi Nakamura., “Reflection-based Word Attribute Transfer,” Journal of Natural Language Processing, vol.28, no.1, pp206-234, Mar. 2021
  • 田中 翔平, 吉野 幸一郎, 須藤 克仁, 中村 哲, “雑談対話応答における連続する事態の一貫性と対話継続性の関係,” 自然言語処理, vol.28, no.1, pp26-59, 2021.3
  • Sony Hartono Wijaya, Farit Mochamad Afendi, Irmanida Batubara, Alex Ming Huang, Naoaki Ono, Shigehiko Kanaya, MD. ALTAF-UL-AMIN, “Identification of Targeted Proteins by Jamu Formulas for Different Efficacies Using Machine Learning Approach,” life, vol.11, no.866, 23 Aug. 2021
  • MD. ALTAF-UL-AMIN, Kazuhisa Hirose, Joao V. Nani, Lucas C. Porta, Ljubica Tasic, Shaikh Farhad Hossain, Alex Ming Huang, Naoaki Ono, Mirian A. F. Hayashi, Shigehiko Kanaya, “A system biology approach based on metabolic biomarkers and protein-protein interactions for identifying pathways underlying schizophrenia and bipolar disorder,” Scientific reports, vol.11, no.1, pp1-11, 14 Jul. 2021
  • Zheng Chen, Naoaki Ono, Wei Chen, Toshiyo Tamura, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang, “The feasibility of predicting impending malignant ventricular arrhythmias by using nonlinear features of short heartbeat intervals,” Computer Methods and Programs in Biomedicine, Jun. 2021
  • Zhang Yongxin, Chen Zheng, Tian Haoyu, Kido Koshiro, Naoaki Ono, Chen Wei, Tamura Toshiyo, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Alex Ming Huang, “A Real-Time Portable IoT System for Telework Tracking,” Frontiers in Digital Health , vol.3, pp47, Jun. 2021
  • Marcio Freire Cruz, Naoaki Ono, Alex Ming Huang, MD. ALTAF-UL-AMIN, Shigehiko Kanaya, Carlos Arthur Mattos Teixeira Cavalcante, “Kinematics approach with neural networks for early detection of sepsis (KANNEDS),” BMC Medical Informatics and Decision Making, vol.21, no.1, pp1-11, 20 May. 2021
  • Shaikh Farhad Hossain, Alex Ming Huang, Naoaki Ono, Aki Morita, Shigehiko Kanaya, MD. ALTAF-UL-AMIN, “Development of a biomarker database toward performing disease classification and finding disease interrelations,” Database, 11 Mar. 2021
  • Van-Hien Tran, Van-Thuy Phi, Akihiko Kato, Shindo Hiroyuki, Taro Watanabe, Yuji Matsumoto, “Improved Decomposition Strategy for Joint Entity and Relation Extraction,” 自然言語処理, vol.28, no.4, 15 Dec. 2021
  • Minegishi, T, Fujikawa, R, Kastian, R.F, Sakumura, Y, Inagaki, N, “Analyses of actin dynamics, clutch coupling and traction force for growth cone advance,” J. Vis. Exp. , vol.e63227, Oct. 2021
  • Tomoyuki Miyano, Kimito Funatsu, Akinori Sato, “Prediction of Reaction Yield for Buchwald-Hartwig Cross-coupling Reactions Using Deep Learning,” moleculear informatics, 29 Sep. 2021
  • Kimito Funatsu, Tomoyuki Miyano, Swarit Jasial, Shunsuke Tamura, “Interpretation of Ligand-based Activity Cliff Prediction Models using the Matched Molecular Pair Kernel,” molecules, vol.26, no.16, 16 Jul. 2021
  • Kimito Funatsu, Tomoyuki Miyano, Swarit Jasial, Hiroshi Nakano, “Sparse Topological Pharmacophore Graphs for Interpretable Scaffold Hopping,” Journal of Chemical Information and Modeling, vol.61, no.7, 15 Jul. 2021
  • Kimito Funatsu, Tomoyuki Miyano, Katsuhisa Matsumoto, “Ranking-Oriented Quantitative Structure-Activity Relationship Modeling Combined with Assay-Wise Data Integration.,” ACS Omega, 26 Jan. 2021

2020

  • Bin Wu, Sakriani Sakti, Jinsong Zhang and Satoshi Nakamura, “Tackling Perception Bias in Unsupervised Phoneme Discovery Using DPGMM-RNN Hybrid Model and Functional Load,” IEEE/ACM Transactions on Audio, Speech, and Language Processing, Dec. 2020
  • Fan Yang, Xin Chang, Sakriani Sakti, Yang Wu and Satoshi Nakamura, “ReMOT: A Model-agnostic Refinement for Multiple Object Tracking,” Image and Vision Computing, pp1-10, Dec. 2020
  • Seiya Kawano, Masahiro Mizukami, Koichiro Yoshino and Satoshi Nakamura, “Entrainable Neural Conversation Model Based on Reinforcement Learning,” IEEE Access, Sep. 2020
  • Tung The Nguyen, Koichiro Yoshino, Sakriani Sakti and Satoshi Nakamura, “Policy reuse for dialog management using action-relation probability,” IEEE Access, Aug. 2020
  • Fan Yang, Yang Wu, Zheng Wang, Xiang Li, Sakriani Sakti, Satoshi Nakamura, “Instance-level Heterogeneous Domain Adaptation for Limited-labeled Sketch-to-Photo Retrieval,” IEEE Transaction on Multimedia, 2020.7
  • Seitaro Shinagawa, Koichiro Yoshino, Seyed Hossein Alavi, Kallirroi Georgila, David Traum, Sakti Sakriani and Satoshi Nakamura, “An Interactive Image Editing System using an Uncertainty-based Confirmation Strategy,” IEEE Access, May. 2020
  • Hiroki Watanabe, Hiroki Tanaka, Sakriani Sakti and Satoshi Nakamura, “Synchronization between overt speech envelope and EEG oscillations during imagined speech,” Neuroscience Research, vol.153, pp48-55, Apr. 2020
  • Takatomo Kano, Sakriani Sakti and Satoshi Nakamura, “End-to-end Speech Translation with Transcoding by Multi-task Learning for Distant Language Pairs,” IEEE/ACM Transactions on Audio, Speech, and Language Processing, Apr. 2020
  • Takatomo Kano, Sakriani Sakti and Satoshi Nakamura, “End-to-End Speech Translation With Transcoding by Multi-Task Learning for Distant Language Pairs,” IEEE/ACM Transactions on Audio, Speech, and Language Processing , vol.28, pp1342-1355, Apr. 2020
  • Johanes Effendi, Katsuhito Sudoh, Sakriani Sakti and Satoshi Nakamura, “Leveraging Neural Caption Translation with Visually Grounded Paraphrase Augmentation,” IEICE, vol.E103-D, no.03, Mar. 2020
  • Hiroki Tanaka, Hidemi Iwasaka, Hideki Negoro and Satoshi Nakamura, “Analysis of Conversational Listening Skills toward Agent-based Social Skills Training,” Journal on Multimodal User Interfaces, vol.14, no.1, pp73-82, Mar. 2020
  • Andros Tjandra, Sakriani Sakti and Satoshi Nakamura, “Machine Speech Chain,” IEEE Transactions of Audio Speech and Language Processing, pp976-989, Mar. 2020
  • Andros Tjandra, Sakriani Sakti and Satoshi Nakamura, “Recurrent Neural Network Compression based on Low-Rank Tensor Representation,” IEICE transactions on information and systems, vol.E103-D, no.02, Feb. 2020
  • The Tung Nguyen, Koichiro Yoshino, Sakriani Sakti and Satoshi Nakamura, “Dialog Management of Healthcare Consulting System by Utilizing Deceptive Information,” Transactions of the Japanese Society for Artificial Intelligence, vol.35, no.1, ppDSI-C_1-12, 1 Jan. 2020
  • 勝見 久央, 吉野 幸一郎, 平岡 拓也, 秋元 康佑, 山本 風人, 本浦 庄太, 定政 邦彦, 中村 哲, “論証対話システムにおける情報探索対話戦略の最適化,” 人工知能学会論文誌, vol.35, no.1, ppDSI-D_1-12, 2020.1.1
  • Daiki Koge, Naoaki Ono, Ming Huang, MD. ALTAF-UL-AMIN and Shigehiko Kanaya, “Embedding of Molecular Structure Using Molecular Hypergraph Variational Autoencoder with Metric Learning,” Molecular Informatics, vol.2020, 8 Nov. 2020
  • Yuki Higa, Young-Soo Kim, MD. ALTAF-UL-AMIN, Alex Ming Huang, Naoaki Ono and Shigehiko Kanaya, “Divergence of metabolites in three phylogenetically close Monascus species (M. pilosus, M. ruber, and M. purpureus) based on secondary metabolite biosynthetic gene clusters,” BMC Genomics, vol.2020, no.21, 1 Oct. 2020
  • Shigehiko Kanaya, MD. ALTAF-UL-AMIN, Aki Morita Hirai, Alex Ming Huang and Naoaki Ono, “Databases for Natural Product Research,” Comprehensive Natural Products III Chemistry and Biology, vol.7, pp222-238/, Sep. 2020
  • MD. ALTAF-UL-AMIN, M. B. Karim, P. Hu, Naoaki Ono and Shigehiko Kanaya, “Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach,” MBC Medical Genomics, vol.13, no.3, pp1-10, Feb. 2020
  • Tomoyuki Miyano and Kimito Funatsu, “Soft Sensor Modeling for Identifying Significant Process Variables with Time Delays,” Industrial & Engineering Chemistry Research, vol.59, no.26, pp12156-12163, 4 Jun. 2020
  • Hiroshi Nakano, Kimito Funatsu and Tomoyuki Miyano, “Exploring Topological Pharmacophore Graphs for Scaffold Hopping,” J. Chem. Inf. Model., vol.60, no.2, pp2073-2081, 23 Mar. 2020

2019

  • Kyoko Hanawa-Suetsugu, Yuzuru Itoh, Maisarah Ab Fatah, Tamako Nishimura, Kazuhiro Takemura, Kohei Takeshita, Satoru Kubota, Naoyuki Miyazaki, Wan Nurul Izzati Wan Mohamad Noor, Takehiko Inaba, Nhung Thi Hong Nguyen, Sayaka Hamada-Nakahara, Kayoko Oono-Yakura, Masashi Tachikawa, Kenji Iwasaki, Daisuke Kohda, Masaki Yamamoto, Akio Kitao, Atsushi Shimada, Shiro Suetsugu, “Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7.”, Nature Communications, 10, 4763, Oct. 2019
  • Manabu Kitamata, Kyoko Hanawa-Suetsugu, Shiro Suetsugu, “Membrane-deformation ability of ANKHD1 is involved in the early endosome enlargement”, iScience, 17, 101-118, June 2019
  • Yoshiaki Haramiishi, Ryo Kawatani, Nalinthip Chanthaset, Hiroharu Ajiro, “Preparation of Block Copolymer of Poly(trimethylene carbonate) with Oligo(ethylene glycol) and the Surface Properties of the Dip Coated Film”
    Polym. Test. 2020, 86, 106484
  • Ryo Kawatani, Malcolm A. Kelland, Hiroharu Ajiro, “Design of a Rigid Side Chain for Poly(N-vinylamide) Derivatives Bearing an Alkenyl Group and Evaluation of Their Ability to Inhibit TetrahydrofuranHydrate Crystal Growth”
    J. Appl. Polym. Sci. accepted on 16th Feb. 2020.
  • Natjaya Ekapakul, Koichi Irikura, Hiroharu Ajiro, Chantiga Choochottiros, “Star-shaped Polycaprolactone/Chitosan Composite Hydrogels: Fabrication and Characterization”, Polym. Int. accepted on 8th Feb. 2020.
  • N Afiqah-Aleng, M Altaf-Ul-Amin, S Kanaya, ZA Mohamed-Hussein, “Graph cluster approach in identifying novel proteins and significant pathways involved in polycystic ovary syndrome”, Reproductive BioMedicine Online 40 (2), pp319-330, 2020
  • M Altaf-Ul-Amin, MB Karim, P Hu, ONO Naoaki, S Kanaya, “Discovery of inflammatory bowel disease-associated miRNAs using a novel bipartite clustering approach”, BMC Medical Genomics 13, 1-10, 2020
  • Yu Miyazaki,  Naoaki Ono,  Ming Huang,  Md. Altaf‐Ul‐Amin, Shigehiko Kanaya, “Comprehensive Exploration of Target‐specific Ligands Using a Graph Convolution Neural Network”, Molecular Informatics (2020), 39, 1900095
  • Guang SHI, Hoko KYO, Toshihiro KAWASAKI, Shigehiko KANAYA, Mariko SATO, Saki TOKUDA-KAKUTANI, Hiroshi WATANABE, Norihito MURAYAMA, Minako OHASHI, Md Altaf-Ul-Amin, Naoaki ONO, Hiroki TANAKA, Satoshi NAKAMURA, Kazuo UEBABA, Nobutaka SUZUKI, Ming HUANG, “Evaluation and Interpretation of 9 Body Constitution Scores of CCMQ-J by Seven Independent Questionnaires”, Japanese J. of Complementary and Alternative Medicine, 16, pp79-93 , 2019
  • 德田（角谷） 佐紀, 田中 宏季, 中村 哲, 村山 宣人, 許 鳳浩, 上馬塲 和夫, 鈴木 信孝, 金谷 重彦,”中医体質と生活習慣病リスクファクターの関連性に関する横断的研究”,日本補完代替医療学会誌, 16, pp105-112, 2019
  • 佐藤 真梨子, 川崎 聡大, 黄 銘, 許 鳳浩, 小野 直亮, 江口 遼平, Md.Altaf-Ul-Amin, 德田（角谷） 佐紀, 渡辺 斉志, 村山 宣人, 中村 哲, 山口 栞,田中 宏季, 金谷 重彦, 朱 燕波, 戴 昭宇, 王 琦, 上馬塲 和夫, 鈴木 信孝,”クラウドソーシングを活用した日本全体のCCMQ-J問診票調査における最適グループ数とその体質特性”, 日本補完代替医療学会誌  16, pp105-112, 2019
  • Miyao T, Jasial S, Bajorath J & Funatsu K. “Evaluation of different virtual screening strategies on the basis of compound sets with characteristic core distributions and dissimilarity relationships. “ J Comput-Aided Mol Des ,33, 729-743, 2019
  • Laufkötter O, Miyao T & Bajorath J. “Large-scale comparison of alternative similarity search strategies with varying chemical information contents. ” ACS Omega 4, 15304-15311
  • Ryohei Eguchi, Naoaki Ono, Aki Hirai (Morita), Tetsuo Katuragi, Satoshi Nakamura,Ming Huang, Md. Altaf-Ul-Amin, Shigehiko Kanaya,Classification of alkaloids according to the starting substances of their biosynthetic pathwaysusing graph convolutional neural networks, BMC Bioinformatics, July 2019
  • Tamura S, MiyaoT & Funatsu K. “Development of R-Group Fingerprints Based on the Local Landscape from an Attachment Point of a Molecular Structure “ J. Chem. Inf. Model 59, 2656-2663, 2019
  • Miyao T & Funatsu K. “Iterative Screening Methods for Identification of Chemical Compounds with Specific Values of Various Properties. ” J. Chem. Inf. Model 59, 2626-2641, 2019
  • Miyao T, Funatsu K & Bajorath J. “Exploring alternative strategies for the identification of potent compounds using support vector machine and regression modeling.” J. Chem. Inf. Model 59, 983-992, 2019.
  • Miyao T, Funatsu K & Bajorath J. “Three-dimensional activity landscape models of different design and their application to compound mapping and potency prediction.” J. Chem. Inf. Model 59, 993-1004, 2019.
  • Mohammad Bozlul Karim, Ming Huang, Naoaki Ono, Shigehiko KANAYA, Md.Altaf-Ul-Amin, “BiClusO: A novel biclustering approach and its application to species-VOC relational data”, IEEE TRANSACTIONS on COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, Jun. 2019

2018

  • Yonchev D, Vogt M, Stumpfe D, Kunimoto R, Miyao T & Bajorath J. , “Computational assessment of chemical saturation of analog series under varying conditions”, ACS Omega, vol.3, no.11, pp15799-15808, 20 Nov. 2018.
  • Miwa Ohnishi, Aya Anegawa, Yuko Sugiyama, Kazuo Harada, Akira Oikawa, Yasumune Nakayama, Fumio Matsuda, Yukiko Nakamura, Ryosuke Sasaki, Chizuko Shichijo, Patrick G. Hatcher, Hidehiro Fukaki, Shigehiko Kanaya*, Koh Aoki, Mami Yamazaki, Eiichiro Fukusaki, Kazuki Saito and Tetsuro Mimura, “Molecular Components of Arabidopsis Intact Vacuoles Clarified with Metabolomic and Proteomic Analyses”, Plant & Cell Physiology, vol.59, no.7, pp1353-1362, 12 Apr. 2018
  • Tetsuo Sato*, Satoshi Kamikawa, Subaru Nakayama, Nobuyasu Ichinose, Shigehide Kuhara, Shigehiko Kanaya*, Kotaro Minato and Cesar Nomura, “Motion Correction for Extracellular Volume Fraction Mapping in Cardiac MRI,” Advanced Biomedical Engineering, vol.7, pp82-87, Apr. 2018
  • Kang Liu, Aki H. Morita, Shigehiko Kanaya* and MD. ALTAF-UL-AMIN*, “Metabolite-Content-Guided Prediction of Medicinal/Edible Properties in Plants for Bioprospecting,” Current Research in Complementary & Alternative Medicine, ppCRCAM-130, Apr. 2018
  • Eguchi R, Karim MB, Hu P, Sato T, Ono N, Kanaya S, Altaf-Ul-Amin M.,BMC Bioinformatics., An integrative network-based approach to identify novel disease genes and pathways: a case study in the context of inflammatory bowel disease, 19:264.pp1-16, (2018)
  • Satoshi WATANABE, Hoko KYO, KANG Liu, Ryohei EGUCHI, Md. Altaf-Ul-Amin, Aki MORITA(Hirai), Minako OHASHI, Naoaki ONO, Alex Ming HUANG, Yanbo ZHU, Qi WANG, Zhaoyu DAI, Yukiko NAKAMURA, Klaus W. LANGE, Kazuo UEBABA, Shintaro HASHIMOTO, Shigehiko KANAYA, Nobutaka SUZUKI, “Data Intensive Study of Accessibility of Edible Species and Healthcare Across the Globe”, Japanese Journal of Complementary and Alternative Medicine, 15,pp37-60(2018)
  • Tomoyuki Miyao, Jürgen Bajorath, “Exploring ensembles of bioactive or virtual analogs of X-ray ligands for shape similarity searching”,  Journal of Computer-Aided Molecular Design, 32, pp759-767, (2018).
  • Victor Andrew A. Antonio, Naoaki Ono, Akira Saito, Tetsuo Sato, Md. Altaf-Ul-Amin, Shigehiko Kanaya, “Classification of lung adenocarcinoma transcriptome subtypes from pathological images using deep convolutional networks“, International Journal of Computer Assisted Radiology and Surgery, 13, pp 1905–1913 (2018).

2017

  • 小野直亮、横山直己、黄銘、Md. Altaf-Ul-Amin、中本雅俊、太田大策, “Bayes ANOVAを用いたEuglena gracilisの代謝経路の網羅的発現変動解析”, Journal of Computer Aided Chemistry, 18, pp 110-116 (2017)

 

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